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Missing Server-side dependencies are not missing

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The Health Analyzer on my Production farm is reporting three features missing when they are in fact deployed. I even did a "View Source" on the Site Collection Features page and the "missing" features and their GUIDs are there and deployed and activated.

Since I am about to apply the Dec. 2012 Cumulative Update, I don't want these "missing" features to cause the upgrade to fail. We have already successfully applied this to our test farm.

Does anyone know why these would be reported as missing and, since they are not, will the upgrade (CU) still fail?

Thanks.

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